[BOOK] High-Performance Computing Using FPGAs

Part I Applications
High-Performance Hardware Acceleration of Asset Simulations ………. 3
Christian de Schryver, Henning Marxen, Stefan Weithoffer,
and Norbert Wehn
Monte-Carlo Simulation-Based Financial Computing
on the Maxwell FPGA Parallel Machine ……………………………….. 33
Xiang Tian and Khaled Benkrid
Bioinformatics Applications on the FPGA-Based
High-Performance Computer RIVYERA ………………………………. 81
Lars Wienbrandt
FPGA-Accelerated Molecular Dynamics ……………………………….. 105
M.A. Khan, M. Chiu, and M.C. Herbordt
FPGA-Based HPRC for Bioinformatics Applications…………………… 137
Yoshiki Yamaguchi, Yasunori Osana, Masato Yoshimi,
and Hideharu Amano
High-Performance Computing for Neuroinformatics Using FPGA …….. 177
Will X.Y. Li, Rosa H.M. Chan, Wei Zhang, Chiwai Yu, Dong Song,
Theodore W. Berger, and Ray C.C. Cheung
High-Performance FPGA-Accelerated Real-Time Search ……………… 209
Wim Vanderbauwhede, Sai. R. Chalamalasetti, and Martin Margala
High-Performance Data Processing Over N-ary Trees …………………. 245
Valery Sklyarov and Iouliia Skliarova
FPGA-Based Systolic Computational-Memory Array
for Scalable Stencil Computations ……………………………………… 279
Kentaro Sano
ix
x Contents
High Performance Implementation of RTM Seismic Modeling
on FPGAs: Architecture, Arithmetic and Power Issues ………………… 305
Victor Medeiros, Abner Barros, Abel Silva-Filho,
and Manoel E. de Lima
High-Performance Cryptanalysis on RIVYERA
and COPACOBANA Computing Systems ………………………………. 335
Tim G¨uneysu, Timo Kasper, Martin Novotn´y, Christof Paar,
Lars Wienbrandt, and Ralf Zimmermann
FPGA-Based HPRC Systems for Scientific Applications ……………….. 367
Tsuyoshi Hamada and Yuichiro Shibata
Accelerating the SPICE Circuit Simulator Using an FPGA:
A Case Study …………………………………………………………… 389
Nachiket Kapre and Andre DeHon
Part II Architectures
The Convey Hybrid-Core Architecture …………………………………. 431
Bernd Klauer
Low Cost High Performance Reconfigurable Computing ………………. 453
Javier Castillo, Jose Luis Bosque, Cesar Pedraza, Emilio Castillo,
Pablo Huerta, and Jose Ignacio Martinez
An FPGA-Based Supercomputer for Statistical Physics:
The Weird Case of Janus ……………………………………………….. 481
Accelerate Communication, not Computation! …………………………. 507
Mondrian N¨ussle, Holger Froning, Sven Kapferer,¨
and Ulrich Br¨uning
High-Speed Torus Interconnect Using FPGAs ………………………….. 543
H. Baier, S. Heybrock, B. Krill, F. Mantovani, T. Maurer, N. Meyer,
I. Ouda, M. Pivanti, D. Pleiter, S.F. Schifano, and H. Simma
MEMSCALE: Re-architecting Memory Resources for Clusters ……….. 569
Holger Fronin, Federico Silla, and Hector Montaner¨
M. Baity-Jesi, R.A. Banos, A. Cruz, L.A. Fernandez,˜
J.M. Gil-Narvion, A. Gordillo-Guerrero, M. Guidetti, D. Iniguez,˜
A. Maiorano, F. Mantovani, E. Marinari, V. Martin-Mayor,
J. Monforte-Garcia, A. M˜unoz Sudupe, D. Navarro, G. Parisi,
M. Pivanti, S. Perez-Gaviro, F. Ricci-Tersenghi, J.J. Ruiz-Lorenzo,
S.F. Schifano, B. Seoane, A. Tarancon, P. Tellez, R. Tripiccione,
and D. Yllanes
Contents xi
High-Performance Computing Based on High-Speed Dynamic
Reconfiguration ………………………………………………………… 605
Minoru Watanabe
Part III Tools and Methodologies
Reconfigurable Arithmetic for High-Performance Computing …………. 631
Florent de Dinechin and Bogdan Pasca
Acceleration of the Discrete Element Method: From RTL
to C-Based Design ………………………………………………………. 665
Benjamin Carrion Schafer and Kazutoshi Wakabayashi
Optimising Euroben Kernels on Maxwell ………………………………. 695
James Perry, Mark Parsons, and Paul Graham
Assessing Productivity of High-Level Design Methodologies
for High-Performance Reconfigurable Computers ……………………… 719
Esam El-Araby, Saumil G. Merchant, and Tarek El-Ghazawi
Maximum Performance Computing with Dataflow Engines ……………. 747
Oliver Pell, Oskar Mencer, Kuen Hung Tsoi, and Wayne Luk

Link :

http://www.mediafire.com/file/u9cj4680vole3xi/%5BHigh_Performance_Computing_Using_FPGAs.pdf

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